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Penn Center for the Molecular Studies of Kidney Diseases, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6144
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ABSTRACT |
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The
FSP1 gene encodes a filament-binding
S100 protein with paired EF hands that is specifically
expressed in fibroblasts. This led us to look for
cis-acting elements in the
FSP1 promoter that might engage
nuclear transcription factors unique to fibroblasts. The first exon of
FSP1 is noncoding, therefore, a series of luciferase reporter minigenes
were created containing varying lengths of 5'-flanking sequence,
the first intron, and the noncoding region of the second exon. A
position and promoter-dependent proximal element between
187 and
88 bp was shown to be active in fibroblasts but not in
epithelium. Sequence in the first intron from +777 to +964 had an
enhancing effect that was not cell type specific. Hsv
TK reporter constructs driven by this promoter/intron
cassette in transgenic mice were coexpressed appropriately with FSP1 in tissue fibroblasts. Gel mobility shift competitor assays identified a
novel domain, FTS-1 (fibroblast transcription site-1; TTGAT from
177 to
173 bp), that specifically interacts with nuclear extracts from fibroblasts. The necessity of this binding
site was confirmed by site-specific mutagenesis. Database searches also
turned up putative FTS-1 sites in the early promoter regions of other
fibroblast expressed proteins, including the
1 and
2(I), and
1(III) collagens
and the
SM-actin gene. We hypothesize that the
selective engagement of FTS-1 elements may contribute to
the mesenchymal phenotype of fibroblasts and perhaps other
dedifferentiated cells.
FSP1; fibroblast; transcription; cis-acting element
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INTRODUCTION |
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THE FIBROBLAST-SPECIFIC protein, FSP1, belongs to the S100 family of intracellular calcium-binding proteins (18, 41, 65). Members of this family have been implicated in microtubule dynamics (10, 18, 42, 54), cytoskeletal-membrane interactions (3, 18, 22, 30, 48, 50), calcium signal transduction (18, 25), cell-cycle regulation (41), and cellular growth and differentiation (6, 9, 37, 47, 48). The FSP1 gene or its corresponding protein (12, 26, 37) have been studied in various species (3, 15, 48, 74). The function of FSP1 is not completely understood, but its interaction with nonmuscle myosin II (20), nonmuscle tropomyosin (67), actin (24, 66, 75), or tubulin (42, 54), as well as its ability to facilitate movement when transfected into cultured cells (7, 19, 29, 55), suggest that FSP1 is involved in mesenchymal morphology and cell motility. Reports concerning the regulation of the FSP1 gene in normal cells are few (8), although FSP1 has been investigated as a possible metastasis-related molecule in dedifferentiated or malignant cells (69-72).
The S100 family of proteins reside in a gene cluster on human chromosome 1q21 called the epidermal differentiation complex (16, 46, 73) which is syntenic to chromosome 3 in the mouse (11). The pattern of expression of the S100 proteins, like FSP1, in normal tissue varies between the family members, but typically they are expressed in mesenchymal or interstitial-derived cells (3, 12, 15, 37, 65). We cloned FSP1 from a subtractive hybridization between renal fibroblasts and isogenic tubular epithelium and found that fibroblast cell lines from different tissues were positive for FSP1, whereas there was no or extremely low level expression of FSP1 in culture-normal, nonfibroblast cells (65).
S100 genes (8, 16, 21, 41, 50, 65) are expressed in more than one tissue, although most are restricted to specific sets of cells. We anticipate selective regulatory processes control their individual expression (8, 21, 38). Tissue- (17, 57, 62) or cell-specific (5, 40, 43, 45, 51, 61) promoters for a growing number of genes are regulated by the modular assembly of cis-acting elements (17, 78) in open chromatin (49) following an interaction with lineage-specific trans-acting proteins (68). Cell-specific expression in fibroblasts suggests that the FSP1 gene may be controlled by mesenchymal-related transcriptional elements.
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MATERIAL AND METHODS |
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Cell culture. The cells used in this study were derived from mice and passaged as continuous lines using standard conditions: NIH/3T3 fibroblasts, 3T3; renal tubulointerstitial fibroblasts, TFB (2); renal proximal tubular epithelial cells, MCT (31); and parietal yolk-sac cells, PYS-2 (63).
Transcription analysis using luciferase reporter
minigenes. Parts of the
FSP1 gene have been reported (GenBank
accession no. M88460) (69). Additional restriction enzyme mapping and
sequencing were performed in this region. A series of luciferase
reporter (L) minigenes were constructed bearing various 5'
fragments of the FSP1 gene. The
plasmids, pF-2500.L, pF-1892.L, pF-1300.L, pF-970.L, pF-463.L,
pF-263.L, pF-187.L, and pF-87.L contain genomic DNA upstream of the
transcription start site, respectively, from approximately
2500,
1892,
1300,
970,
463,
263,
187, and
87 bp. These plasmids, as well as the first
noncoding exon (+67 bp 3'), were placed 5' of the
luciferase cDNA in pGL2b (Promega, Madison, WI). Fragments
also containing the first intron (1159 bp) terminating immediately
5' of the translation start site (+1222 bp 3') were
inserted into pGL2b, yielding pF-2500.IntL, pF-1892.IntL, pF-1300.IntL,
pF-970.IntL, pF-463.IntL, pF-263.IntL, pF-187.IntL, and pF-87.IntL. To
characterize fragments containing possible regulatory elements, such
fragments were inserted into the upstream or downstream multilinker
sites of pF-263.IntL, pF-87.IntL, pGL2p, and pGl2b with various
promoters: RSV from pREP4 (Invitrogen, San Diego, CA), or minimal
promoters E1B and murine alkaline phosphatase/pAP-44 (Gifts of Dr.
Thomas Kadesch, Howard Hughes Medical Institute, University of
Pennsylvania). In addition, pF-187M1.IntL and pF-187M2.IntL were
similar constructs to pF-187.IntL except that the sites
177/
173 bp and
151/
146 bp were mutated,
respectively. pGL2c (Promega, Madison, WI) served as a positive
control. The accuracy of all constructed plasmids were verified by
restriction enzyme mapping or sequencing.
Transient transfections were carried out using
CaPO4 (1). Six micrograms of pGL2c
or isomolar amounts of sample luciferase constructs were cotransfected
with 1.5 µg of pCH110 (Pharmacia), a vector expressing
-galactosidase, into 1.0 × 105 cells plated on each well of
the 6-multiwell plate. Medium was changed 24 h later, and cells were
harvested 48 h after transfection by lysis in
KPO4-DTT with 1%
Triton X-100. Supernatants were assayed for luciferase activity by
Lumat LB 9501 luminometer. Each luciferase activity was normalized for
-galactosidase activity and then expressed as relative percentage of
control pGL2c activity. The final values of the luciferase activity
represent the average of at least three independent transfections ± SE.
Mobility gel shift and competitor
assay. Nuclear extracts were prepared from 3T3, TFB,
MCT, and PYS-2 cells (1). Protein concentrations were determined using
the BCA Protein Assay Reagent (Pierce), and nuclear extracts were
divided into aliquots, and stored at
70°C. The probe
100-5' (
187 to
88) was created by PCR
amplification of ~100 bp region from an
FSP1 genomic fragments using the
flanking oligomers as primers; 5' acgcgtCACTCACTACTTGATTGT 3' and 5' gtcgacTGTTGGTTGATGTAGTAA 3'. The lower case
letters represent restriction sites to facilitate cloning. The amplicon was cloned into the vector pCRII (Invitrogen) and later digested with
appropriate restriction enzymes leaving 5' overhangs which were
dephosphorylated with calf intestinal alkaline phosphatase. This
fragment was end-labeled with
[
-32P]ATP using
T4 kinase, generating a probe for
gel shift assays (1). In addition, short fragments of 50 bp and
20-25 bp within region 100-5', with or without
mutations, were synthesized for use as competitive oligomers. A
quantity of 104 cpm of probe was
incubated with 10 µg of nuclear extract in the presence of
poly-d(I-C) and competitor oligomers as indicated, 12% glycerol, 10 mM
Tris (pH 7.5), 100 mM KCl, 5 mM
MgCl2, 1 mM DTT, 1 mM EDTA, 300 µg/ml BSA, and 0.1% Triton X-100 in a 25-µl volume for 30 min at
4°C. Reaction mixtures were electrophoresed through a 5%
polyacrylamide gel in low ionic running buffer [6.7 mM Tris (pH
7.5), 3.3 mM sodium acetate, and 1 mM EDTA]. Dried gels were
exposed to X-ray film at
70°C with an intensifying screen.
Methylation interference assay.
Methylation interference assay was minimally modified from Hendrickson
and Schleif (35). The 100-5' was excised with
Mlu I and
Sal I from the pCRII plasmid and
end-labeled with
[32P]dCTP and
[32P]dGTP, or
[32P]dCTP and
[32P]TTP,
respectively, using Klenow fragment, yielding +/
strand probes.
Purines were methylated by adding 1 µl of dimethyl sulfate to the DNA
probe in 200 µl of a solution of 50 mM sodium cacodylate (pH 8.0), 10 mM MgCl2, and 0.1 mM EDTA and
incubating for 5 min at room temperature. This reaction was stopped by
adding 50 µl of a solution of 1 M Tris · HCl (pH
7.5), 1 M 2-mercaptoethanol, 1.5 M sodium acetate, 0.05 M magnesium
acetate, 1 mM EDTA, and 0.1 mg/ml yeast tRNA. Modified probes were
precipitated with ethanol, washed, dried, and resuspended in 10 mM
Tris · HCl, pH 7.5, and 1 mM EDTA. Nuclear extracts
(0 and 10 µg) were incubated with 105 cpm of probe in the presence
of poly-d(I-C) for 30 min at 4°C in a 25 µl of binding buffer.
The samples were electrophoresed through a 5% polyacrylamide gel in
low ionic running buffer. The wet gels were exposed to X-ray film for
overnight, and the free probe and the protein-bound probes were
recovered by DEAE membrane method (39). The recovered samples were
cleaved at the positions of the modifications. To display methylated
purines, DNA was heated at 90°C in 10% piperidine for 30 min.
Subsequently, the samples were lyophilized in a vacuum evaporator until
dry. Addition of 30 µl of water, freezing, and lyophilizing were
repeated twice. Positions of the cleavages were determined by running
through the 7% polyacrylamide/8 M urea gel in TBE running buffer (89 mM Tris base, 89 mM boric acid, and 2 mM EDTA). The
sample of the G+A reaction of the Maxam-Gilbert sequencing technique
(60) was also run simultaneously as the marker. The gel was dried and exposed to film.
Immunohistochemistry of transgenic
mice. A second reporter minigene consisting of
2500/+1222 bp of the FSP1
promoter, which is the same as pF-2500.IntL shown in Fig.
1, driving the herpes simplex virus
thymidine kinase (Hsv TK) cDNA, was
assembled (pFSP1.tk) for injection.
Blastocysts were injected with
pFSP1.tk, and subsequently two lines
were established and bred against SJL mice. Adult mice were killed, and their organs were fixed in 4% paraformaldehyde. Immunohistochemistry on 4-µm tissue sections was carried out using polyclonal anti-FSP1 antibodies (65) and anti-thymidine kinase antibodies (provided by W. C. Summers, Yale University) developed by
the ABC-peroxidase method (Vectastain Elite ABC kit; Vector Laboratories, Burlingame, CA).
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Statistics. In some experiments statistics were performed using Student's t-test.
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RESULTS |
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Functional characterization of cis-acting regulatory
elements in the flanking regions of the murine FSP1
promoter. Since murine transcripts encoding FSP1 are
predominantly seen in fibroblasts (65), we began looking for the
cis-acting elements responsible for
restricting transcription to these cells. Figure 1 shows a restriction
map of the murine FSP1 gene. In the
first set of constructs (Fig. 1A),
a series of luciferase reporters (L) were assembled using a 5'
EcoR
I-Nhe I fragment (around
2500/+67 bp) and its subfragments all ending at +67 bp.
Transfection of these constructs demonstrated significantly greater
expression in 3T3 fibroblasts than in MCT epithelium. This finding is
consistent with transfection results using other tissue fibroblasts and
nonfibroblast cells (65); data not shown.
A second set of luciferase constructs were assembled by adding the 1st
intron with the splice donor and acceptor sequences in native
configuration (Int) to the constructs used above. Overall the
expression of FSP1 promoter (Fig.
1B) in 3T3 fibroblasts was greatly
enhanced by the addition of the first intron compared with the
intronless promoters (pF-2500.L, pF-263.L, pF-187.L, and pF-87.L)
described in Fig. 1A. This
enhancement was also seen to proportionally affect epithelial cells and
therefore was not cell lineage specific. Subsequent experiments
isolated this enhancement to a discrete region in the first intron
(+777 to +964 bp; data not shown). Of special note in Fig.
1B was the strong luciferase activity
of pF-187.IntL in fibroblasts, which fell to levels registered in
epithelium with the promoter deletion of
187 to
88 bp
(pF-187.IntL vs. pF-87.IntL; P
0.001), suggesting this proximal region spanning
187 to
88 is important to the fibroblast phenotype. All of the transfection experiments in MCT epithelium were confirmed using several
other nonfibroblastic cell lines (data not shown).
We next created a series of constructs in which the putative
fibroblast-specific promoter-proximal fragment (
187 to
88
bp) was placed either upstream or downstream of pF-87.IntL in the reverse and native orientation, generating
pF(
187/
88)R-87.IntL and pF-87.IntL(
187/
88),
respectively. In Fig. 2 this fragment increased the transcriptional activity in 3T3 fibroblasts best when it
was located at the upstream, native orientation (pF-187.IntL P
0.001), somewhat less in the
reverse upstream position (pF(
187/
88)R-87.IntL; P
0.05), and not at all when
located downstream in a forward orientation
[pF-87.IntL(
187/
88);
P = not significant (NS)].
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Mapping a proximal element in the 5'-flanking
region of the FSP1 promoter. Both strands of the
FSP1 promoter region
contained within the construct pF-187.L were resequenced for comparison with the reported sequence (71). Only one discrepancy was found;
142 to
140 bp is GGT instead of AGA. All sequences,
competitors, and mutants used for the shift assays are listed in Table
1. Nuclear extracts prepared from 3T3
fibroblasts and MCT epithelium were compared in shifts (Fig.
3) using a
32P-labeled 100-bp probe spanning
187 to
88 bp (100-5'). The minor band marked
by the solid arrow in Fig. 3 was consistently present in
fibroblasts, and all the bands observed in this gel shift assay were
completely quenched in the presence of a 200-fold molar excess of
unlabeled probe (Fig.
4A).
Other gel shifts using the same 100-5' probe and nuclear
extracts from TFB fibroblasts and PYS-2 endoderm demonstrated the same
set of shifted bands only with fibroblasts (data not shown).
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To localize the protein DNA-binding site, synthesized oligomers within
100-5' were employed as competitors (Table 1) in gel shifts
under similar conditions as reported above. Among the 50-bp competitive
oligomers employed in this study, only the 5' fragment C1/2(50)
could prevent probe retardation, suggesting that the 5' end of
the 100-bp probe is important for binding (data not shown).
Subsequently, a 25-bp oligomer from
187 to
162 bp,
C1(25), competed out the shifted band created by 100-5'
probe with fibroblast extract, whereas an adjacent 25-bp oligomer could
not (Fig. 4A). By repeating the
competition with a series of mutant oligomers made from C1(25), we
observed that mutant M1-3 failed to abolish the shifted band,
indicating that the base pairs changed in this oligomer were critical
for the binding of the fibroblast nuclear factors (Fig.
4B). Thus a core binding site was
approximately localized to 5' TTGAT 3', from
177 to
173 bp in the promoter of FSP1.
Tandem repeats of fragment
182 to
168 were cloned into 5' sites in front of various heterologous promoters. This tandem repeat region as well as cis-fragment
187 to
87 was unable, however, to enhance heterologous
promoter function in fibroblasts compared with native promoter,
pF-187.IntL (data not shown), suggesting the candidate elements were
promoter dependent.
A methylation interference assay was then performed using a gel cutout
of this specific, shifted band as template (data not shown). The
177 to
173 region is AT-rich and only contains one potential interference site. No interference was observed for the G at
175 and other Gs flanking this core sequence, suggesting they
are not important for local protein-DNA binding. Another shifted band
from that region containing an Ets-like site 5' TCTGGGAA 3', which was detected in gel shift assays under different
conditions but proved not to be functional in fibroblast transfections,
produced a positive interference reaction as control. Single base
mutations of the G at
175 did not inhibit competition in the gel
shift further, suggesting that the G base was not critical (data not shown).
To further address the authenticity of the putative
cis-acting element defined by
M1-3, an identical mutation was introduced into the luciferase
reporter construct (pF-187.M1IntL), and a new set of transient
transfections were carried out. In Fig. 5, the fibroblast-specific transcriptional activity of
pF-187.M1-3IntL was reduced back to the level of the minimal
promoter pF-87.IntL compared with the native construct, pF-187.IntL
(P
0.001). A mutation at
151
bp, which did not compete for gel shift, also did not affect the
luciferase activity (pF-187.M2IntL).
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A larger pF-2500.M1-3IntL construct containing the M1-3 mutation also reduced transcription by 30% compared with wild-type sequence (data not shown).
Putative regulatory elements of the FSP1 gene are
active in transgenic mice. The
FSP1 gene fragment containing the
promoter and intronic elements used in the pF-2500.IntL minigene (Fig. 1; around
2500 to +1222 bp) were next used to
drive Hsv TK cDNA (pFSP1.tk) in
transgenic mice. The distribution of Hsv TK was concordant with FSP1
expression in all tissue examined (data not shown; unpublished
observations). Kidney tissue harvested from transgenic progeny was
stained by immunohistochemistry (Fig. 6); interstitial cells staining for Hsv TK were also positive for FSP1
protein using a serial section analysis. Two lines of transgenic mice
demonstrated the same result in kidney, although data from only one of
the two are shown. Sections from the nontransgenic littermates stained
positive for FSP1 protein, but were negative for Hsv TK amplicons, and
did not stain for Hsv TK protein (data not shown).
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DISCUSSION |
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The mechanisms regulating the bidirectional transformation of epithelium and mesenchyme are not fully known, although a number of processes have been proposed (34). It is likely that a combination of morphogenic cues including adhesion, matrix, and paracrine stimulation work in combination to activate genes that alter and then stabilize cell phenotype (34, 77). We have approached this issue by looking at the regulation of the FSP1 gene in fibroblasts (65). The FSP1 gene was isolated by subtractive hybridization between murine renal fibroblasts and isogenic epithelium (65). The expression of the FSP1 gene in nonmalignant cells in mice is exclusively observed in fibroblasts (26, 37, 65). However, the expression of FSP1 homologs in other species or in malignant cells may have a different distribution (8, 12, 15, 23, 28, 48, 74).
Although it has recently been suggested that the 5'-flanking
fragments of the FSP1 gene play no
part in its expression in tumor cells (69, 71), their control in
cultured fibroblasts has not been explored. In the current study using
several murine fibroblasts and nonfibroblast cells, we observed that
the 5' cis-acting element
5' TTGAT 3' between
177 and
173 bp is
critical in fibroblast-specific transcription of the
FSP1 gene. Consequently, we refer to
this position and promoter-dependent proximal element as FTS-1
(fibroblast transcription site-1). FTS-1 activity is greatly augmented
by universal activity located in the first intron (between +777 and +964 bp). Our findings are consistent with the observation that promoter sequences in other members of S100 superfamily contain their
own cell-specific regulatory elements (38). There seems to be a
difference in the pattern of expression of the
FSP1 gene in two closely related
species, mouse and rat (8). Although 5'-flanking sequence of the
rat FSP1 gene is not reported, we surmise that differences in the controlling regions may explain why
they are differentially expressed in the two rodent species.
Finally, a reporter minigene containing the native FTS-1 element as
well as other control regions of the
FSP1 gene coexpressed only in
FSP1+ tissue fibroblasts in
transgenic mice. A further search of genomic databases with the novel
FTS-1 sequence identified identical sites in the early promoter regions
of other fibroblast-relevant genes such as
1 and
2(I), and
1(III) procollagens, as well as
the
SM-actin gene. These latter genes are typically
engaged with some exclusivity by activated fibroblasts (27, 56, 64). Although the presence of FTS-1 sequence in the regulatory regions of
these genes only promotes speculation, it is of interest that two FTS-1
sites are present at positions
1707 and
954 bp in the
cis-acting cassette required for
cell-specific transcription of
1(I) procollagen in skin and
tendon fibroblasts in transgenic mice (36, 59). Similar findings were
observed in transgenic mice expressing
2(I) procollagen minigenes,
where the promoter region between
2000 and
350 bp was
required for expression in most type I collagen-containing cells (51);
an FTS-1 site is also present in that gene at position
752 bp.
Finally, an FTS-1 site was not observed in the
1(I) procollagen promoter
region (
1656 to
1540 bp) that confers high level,
specific expression in osteoblasts (58). These findings are all
consistent with the special effect of FTS-1 sites on the definition of
a fibroblast.
Phenotypic conversions between epithelium and mesenchyme follow a bidirectional pathway during early pattern formation as well as later during the specialization and development of organ tissue (4, 13, 14, 32-34). The dedifferentiation of somatic cells during oncogenesis (19, 44, 59) or the mesenchymalization of epithelium during episodes of fibrogenesis (65) following wounding (51, 64) or inflammation (27, 53, 56) are perhaps the parallel processes in mature cells from adult tissues (32, 34, 44, 53, 76). The future identification of trans-acting factors that bind to elements like FTS-1 should bring us even closer to understanding the plasticity of cell transformation, the modular control of mesenchymal phenotypes, and the gating necessary to selectively engage tissue fibroblasts during organ fibrosis. FSP1 is a critical part of this fibrogenic program, and its role in renal fibrosis is gradually unfolding (52).
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ACKNOWLEDGEMENTS |
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This work was supported in part by National Institute of Diabetes and Digestive and Kidney Diseases Grants DK-07006, DK-30280, DK-41110, DK-02334, and DK-45191 and by administrative/educational funds from the DCI RED Fund. H. Okada was a recipient of a fellowship from Eli-Lilly Japan and received financial support from Takeda Science Foundation. F. Strutz was supported by Deutsche Forschungsgemeinschaft Str 388/1-1. A. Fischer was a recipient of a grant from the Swiss National Foundation for Scientific Research and received support from Roche Research Foundation, Ciba-Geigy Jubilaeumsstiftung, and Janggen-Poehn Foundation.
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FOOTNOTES |
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Address for reprint requests: E. G. Neilson, C. Mahlon Kline Professor of Medicine, Penn Center for Molecular Studies of Kidney Diseases, 700 Clinical Research Bldg., Univ. of Pennsylvania, 415 Curie Boulevard, Philadelphia, PA 19104-6144.
Received 21 July 1997; accepted in final form 30 April 1998.
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